Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6872364 chr5:7319767 C/T 9.46E-9 490 30.9 31.12 10.07 KM Plot
PRAD rs6873948 chr5:7322656 T/C 8.53E-10 488 31.07 31.12 10.07 KM Plot
PRAD rs6874459 chr5:77252012 C/T 2.65E-5 490 32.43 30.93 30.97 KM Plot
PRAD rs6887339 chr5:7326039 A/G 1.02E-8 488 30.8 31.93 10.07 KM Plot
PRAD rs6887523 chr5:7322389 A/C 0 494 4.87 31.3 30.9 KM Plot
PRAD rs6895588 chr5:154356186 C/T 0 485 30.27 33.07 5.58 KM Plot
PRAD rs6895702 chr5:154356068 G/T 0 488 30.33 32.52 4.87 KM Plot
PRAD rs6895741 chr5:154203264 G/A 8.86E-9 491 30.3 33.27 20.47 KM Plot
PRAD rs6903728 chr6:18837098 A/G 2.11E-5 483 30.93 31.13 25.27 KM Plot
PRAD rs6934291 chr6:19164056 G/A 0.000175 491 28.57 32.23 30.2 KM Plot
PRAD rs6941129 chr6:42955101 C/T 7.7E-5 493 30.53 32.18 24.13 KM Plot
PRAD rs6961685 chr7:135115985 T/C 1.95E-9 493 30.77 31.9 3.03 KM Plot
PRAD rs6989962 chr8:143452518 G/A 1.23E-5 489 30.8 31.43 28.77 KM Plot
PRAD rs6999707 chr8:140963102 C/T 4.01E-5 494 28.3 29.57 31.87 KM Plot
PRAD rs7014127 chr8:71541063 T/C 4.69E-5 492 30.93 31.57 24.27 KM Plot